Related links  
  References  
     
     
 
Related links
 
The Fantom (Functional Annotation of the mouse)
Provide human CAGE database
 
DBTSS
Database of Transcriptional Start Sites, based on the unique collection of precise, experimentally-determined 5'-end sequences of full-length cDNAs
 
miRBase
A searchable database of published miRNA sequences and annotation
 
miRNAMap
Genomic maps of studying genes regulation by metazoan microRNAs
 
Ensembl
Genome databases for vertebrates and other eukaryotic species
 
UCSC Genome Browser
Provides genome browser, gene sorter, blat search function, and publications
 
 
 
 
 
 
 
 

References

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Barski, A., Cuddapah, S., Cui, K., Roh, T.Y., Schones, D.E., Wang, Z., Wei, G., Chepelev, I. and Zhao, K. (2007) High-resolution profiling of histone methylations in the human genome. Cell, 129, 823-837.

Carninci, P., Sandelin, A., Lenhard, B., Katayama, S., Shimokawa, K., Ponjavic, J., Semple, C.A., Taylor, M.S., Engstrom, P.G., Frith, M.C. et al. (2006) Genome-wide analysis of mammalian promoter architecture and evolution. Nat Genet, 38, 626-635.

Shiraki, T., Kondo, S., Katayama, S., Waki, K., Kasukawa, T., Kawaji, H., Kodzius, R., Watahiki, A., Nakamura, M., Arakawa, T. et al. (2003) Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage. Proc Natl Acad Sci U S A, 100, 15776-15781.

Bentley, D.R. (2006) Whole-genome re-sequencing. Curr Opin Genet Dev, 16, 545-552.

Wakaguri, H., Yamashita, R., Suzuki, Y., Sugano, S. and Nakai, K. (2008) DBTSS: database of transcription start sites, progress report 2008. Nucleic Acids Res, 36, D97-101.

Lee, Y., Kim, M., Han, J., Yeom, K.H., Lee, S., Baek, S.H. and Kim, V.N. (2004) MicroRNA genes are transcribed by RNA polymerase II. EMBO J, 23, 4051-4060.

Down, T.A. and Hubbard, T.J. (2002) Computational detection and location of transcription start sites in mammalian genomic DNA. Genome Res, 12, 458-461.

Abeel, T., Saeys, Y., Bonnet, E., Rouze, P. and Van de Peer, Y. (2008) Generic eukaryotic core promoter prediction using structural features of DNA. Genome Res, 18, 310-323.

Reese, M.G. (2001) Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome. Comput Chem, 26, 51-56.

Knudsen, S. (1999) Promoter2.0: for the recognition of PolII promoter sequences. Bioinformatics, 15, 356-361.